The only sub-model which uses constraint based modeling is the metabolic sub-model. The other sub-models use different mathematical formalisms which aren't compatible with COBRA.
We do use the COBRA toolbox to output this sub-model to SBML (see: ). The SBML file is available at .
Procedure to generate a COBRA compatible submodel?
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Procedure to generate a COBRA compatible submodel?
by bebarker » Wed Apr 22, 2015 11:09 am
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Re: Procedure to generate a COBRA compatible submodel?
by jonrkarr » Wed Apr 22, 2015 12:16 pm
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Re: Procedure to generate a COBRA compatible submodel?
by bebarker » Wed Apr 22, 2015 1:47 pm
Thanks - I appreciate the pointers and quick response (and also the fact that it is already a supported feature!), will try it out starting today.
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