Learn more: Lectures, primers, and articles
An introduction to whole-cell modeling Karr JR & Goldberg AP
2020 WC Workshop June, 2020 New York, US
2019 WC School April, 2019 CRG, ES
2017 WC School September 4-7, 2017 CRG, ES
2016 WC School April 3-8, 2016 CRG, ES
2015 WC School March 9-13, 2015 Univ of Rostock, DE
Covert MW. Simulating a living cell. Sci Am 2014.
Carrera J & Covert MW. Why Build Whole-Cell Models? Trend Cell Biol 2015.
Karr JR et al. The principles of whole-cell modeling. Curr Opin Microbiol 2015.
Goldberg AP et al. Emerging whole-cell modeling principles and methods. Curr Opin Biotech 2017.
Macklin DN et al. The future of whole-cell modeling. Curr Opin Biotechnol 2014.
Szigeti B et al. A blueprint for human whole-cell modeling. Curr Opin Syst Biol 2018.
Goldberg AP et al. Toward scalable whole-cell modeling of human cells. ACM Conf Prin Adv Discrete Simul 2016.
Waltemath D et al. Community standards and software for whole-cell modeling. IEEE Trans Biomed Eng 2016.
Karr JR et al. A whole-cell computational model predicts phenotype from genotype. Cell 2012.
Sanghvi JC et al. Accelerated discovery via a whole-cell model. Nat Meth 2013.
Kazakiewicz D et al. Systems and structural modeling reposition antibiotics. Comput Biol Chem 2015.
Purcell O et al. Towards a whole-cell modeling approach for synthetic biology. Chaos 2013.
Karr JR et al. WholeCellKB: model organism databases for whole-cell models. Nucleic Acid Res 2013.
Karr JR et al. Toward parameter identification for whole-cell models. PLoS Comput Biol 2015.
Karr JR et al. WholeCellSimDB: a database for whole-cell model predictions. Database 2014.
Lee R et al. WholeCellViz: data visualization for whole-cell models. BMC Bioinformatics 2013.
